Tuberculosis Database

Quick Links

Gene Expression Publications: Search and browse publications with gene expression data that are stored in TBDB.
Gene Search for Expression: Search for M. tuberculosis, Streptococcus and human genes associated with gene expression data in TBDB.
My Repository (sign in required): Access your saved microarray data sets for further analysis.
BLAST - search all genomes by sequencing similarity
Genes - Gene annotations by functional categories
Download - download data files for sequence and annotation

Tools & Analysis

Expression Analysis

Several analysis tools can be applied to microarray data in TBDB (hierarchical clustering, Self-Organizing Maps, Singular Value Decomposition, estimation of missing values, etc. The first step is to select a set of microarray data that you want to analyze.

Basic Expression Search: Interactive search for microarray data.
Advanced Expression Search: Search for microarray data by organism, experimenter, array designs and more.
My Repository (sign in required): Analyze microarray data you have saved. Access tools for hierarchical clustering, making Self-Organizing Maps, estimating missing data and more.

Genome Visualization

Argo: The Argo Genome Browser is the Broad Institute's production tool for visualizing and manually annotating whole genomes.
Feature Map: provides a visual map of features for a given region.

ComparativeGenome Visualization

Synteny Map: Displays a synteny map for any genome having chromosomes.
Dot Plot: Displays a dotplot of a reference genome compared to one or more alternate genomes.
Operon Browser.