FAQ

• Frequently Asked Questions

TB Database Introduction

• Access Policies and Database Accounts
• Registration
• Working with files in UNIX
• Data File Formats
• Scheduled Downtime

Entering Data

• Experiment Entry
  • Individual Experiment Entry
  • Batch Experiment Entry
• Experiment Deletion
• Normalization
  • Normalization based on a Genelist
• Replacing the image of an array

Organizing Your Data

• Creating and Using Arraylists and Result Set Lists
• Creating and Using Experiment Sets
• Creating and Using Genelists
• Entering and Using Protocols
• Annotating Experiments
• Entering Procedural Annotation

Searches

• Using the Basic Search
• Using the Advanced Results Search
• Search Using Gene Names
• Gene Profiles
• Gene Expression Samples and Conditions

Data Retrieval and Analysis

• Data Selection for Analysis
• Data Analysis and Clustering
• The Repository
• Data Analysis Using SVD
• GO::TermFinder
• Compare Two Experiments
• Data Analysis Methods
• Data File Formats
• Job Queue and the Job Manager
• Q-score calculation
• MEEBO/HEEBO quality plots
• Synthetic Genes
• SMD Tools
• SMD Web Services

Glossary

• Definitions for frequently used terms