TB Database: an integrated platform for tb drug discovery
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Quick Links

  • Gene Expression Publications: Search and browse publications with gene expression data that are stored in TBDB.
  • Gene Search for Expression: Search for M. tuberculosis, Streptococcus and human genes associated with gene expression data in TBDB.
  • My Repository (sign in required): Access your saved microarray data sets for further analysis.
  • BLAST - search all genomes by sequencing similarity
  • Genes - Gene annotations by functional categories
  • Download - download data files for sequence and annotation
  • Gene Index

    Gene finding methods

    Information on how this putative gene set was created

    Search for genes

    Search database of all TB Genomes genes by name, locus, position, or PFAM domain

    BLAST against protein set

    Search predicted proteins using blastp.

    Download FASTA files and supplementary material

    FASTA files for genome sequence, genes, translated proteins are available.

    Genes by PFAM domain

    Genes categorized by HMMER hit to a PFAM protein domain

    Genes for functional RNA by RFAM family

    Features categorized by INFERNAL hit to an RFAM family

    Operons

    Searchable list of operon predictions

    Genes indexed by functional annotation

    • KEGG: Kyoto Encyclopedia of Genes and Genomes
    • PWY: BioCyc Pathways
    • EC: Enzyme Committee Nomenclature
    • GO: Gene Ontology